Tarmo,
seems to be a typical after market exhaust issue(?) Unless some corroded ignition coil/sparkplug cables or any contacts don't achieve resonance with the engine vibration @2500rpm, which is unlikely.
Have you already done Motronic reset? Before doing that I'd also check the fault code report for any sign of a bad lambda sensor connection. Are you using OEM air filter or any after market (K&N)?
I experimented with a hand made racing exhaust some time back on my 1100 and it then had multiple dead spots over the rpm range, mostly on low and mid revs, and as with any racing exhaust - most of the power was shifted to the high revs. But the main spot was somewhere around 3000rpms, the exhaust was w/o Lambda(O2) sensor, so I thought this could be the cause, since the injection's open->closed loop mapping transition should be around 3000rpms. The bike was almost unrideable since on communiting I mostly use 2000-4000rpms that was the worst with the exhaust. K&N filter "smoothed" some of these spots but it apparently shifted the power even more higher RPMs, so it was a dead end. I put the OEM exhaust back.
Now I bough Leo Vince after market exhaust, with Lambda sensor and the engine seems to work as should all over the RPM range. I'm using OEM paper air filter currently. What I like about it is that it has preserved the low-rpm power, that most of sports/racing exhaust don't do, a feature which I really like about this exhaust. I only did a 300kms ride with it just few days ago, so maybe too early to tell about the details. What I'm certain is that there isn't any that dramatic dead spots as the hand-made racing exhaust had, I'd notice those instantly.
Keep us updated on your case!
Margus
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