Pure and wild speculation from far away: maybe Eritrea - Somaliand - Ethiopia could be an option, thereby bypassing the areas with trouble in Ethiopia. Somaliland is reportedly safe and distinct from Somalia. Or, if you feel very adventurous and have a lot of time: Chad - CAR - DRC - Uganda
Unfortunately I dont have current info about the situation, when I crossed Africa, Sudan/Ethiopia were well. But then it's part of the adventure, there always is a jigsaw puzzle in Africa. When I went, there were no ferries to Egypt, Syria out of order etc, so I went through Libya. That was amazing but also quite a jigsaw puzzle to make it happen.
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